There is probably a little looseness in the fit of the firing pin in the bolt, and this probably leaves a wider gap at the top of the firing pin tip. As to whether this is detrimental to accuracy, without a picture, it is have to make a judgment, but I doubt it. If the pin strike is reasonably well centered in the primer, and the depth of the indentation looks good, the crater happens after the primer has already gone off, and does not typically indicate anything more than a loose fit. If the primers do not rupture, then it is not really an issue as far as accuracy.
I have a .222 that is quite accurate. that is built on a Remington 722 action, and it leaves a substantial crater on primers, but they do not leak any gas. I could have Greg Tannel bush the firing pin hole and reduce the tip diameter for about $60, but it seems to shoot pretty well as is, having produced some groups in the ones, when properly tuned and driven.