You don't say what caliber or dies you used, but you are probably using standard dies with the expander ball near the bottom of the decapping pin. What happens is that the die sizes the neck way smaller than what is necessary to hold the bullet. Then on the downstroke of the press, after the neck is completely clear of any support by the die, the neck is pulled over the expander ball. if the brass is thinner on one side or softer on one side, most of the expansion will occur on the thin/soft side and the neck will be pulled out of concentricity. Seating the bullet will move the neck a few more thou and there you go. You have bullets that are visibly off center.
Try a Lee collet die or a bushing sizing die and you will be amazed how much more concentric your ammo is. Using a straight line seater on crooked cases ain't gonna get you very far.